闽楠BBR-BPC基因家族的全基因组鉴定

Genome-Wide Identification of the BBR-BPC Gene Family in Phoebe bournei

  • 摘要: BBR-BPC是含有BPC结构域的植物特有转录因子家族,在调控植物生长发育与逆境响应中发挥关键调控作用。闽楠(Phoebe bournei)为国家二级重点保护野生植物,其BBR-BPC家族尚未见系统研究。基于闽楠全基因组数据,对该家族进行系统鉴定,并分析其进化特征、启动子元件与组织表达模式等。共鉴定出8个BBR-BPC基因,系统发育分析将其划分为3个亚家族,分布于6条染色体。所有成员均含有高度保守的五半胱氨酸结构域与核心基序Motif1、2、4,种内共线性分析未检测到大片段串联重复事件。种间共线性分析显示,该家族与双子叶植物的共线性显著高于单子叶植物,表明其进化保守性。启动子分析显示,光响应元件占比最高(23.8%),广泛存在于各成员中。组织表达显示,PbBBR-BPC7在根皮和茎皮中特异性高表达,且其启动子区富集ABA响应元件。综合结果表明,闽楠BBR-BPC家族具有进化保守性,成员间存在潜在的功能分化,PbBBR-BPC7可能通过ABA信号通路参与皮层组织胁迫应答。研究结果可为解析该家族的生物学功能及珍贵树种的分子育种提供参考。

     

    Abstract: BBR-BPC is a family of transcription factors unique to plants that contain the BPC structure domain and play a crucial regulatory role in controlling plant growth and development,as well as responses to stress.Phoebe bournei is a second-class rare and endangered tree species in China,and its BBR-BPC family has not been the subject of systematic research.This study,based on the whole-genome data of Phoebe bournei,systematically identified this family and analyzed its evolutionary characteristics,promoter elements,and tissue expression patterns.A total of 8 BBR-BPC genes were identified,and phylogenetic analysis divided them into 3 subfamilies distributed across 6 chromosomes.All members contain highly conserved five-cysteine structures and core motifs Motif1,2,4,and no tandem repeat events were detected.Interspecific collinearity analysis showed that this family exhibits a significantly higher degree of collinearity with dicotyledonous plants compared to monocotyledonous plants,suggesting its evolutionary conservatism.Promoter analysis revealed that photoresponse elements account for the highest proportion(23.8%)and are widely present among all members.Tissue expression analysis showed that PbBBR-BPC7 exhibits high specificity in root bark and stem bark,with its promoter region enriched with ABA response elements.These findings indicate that the Phoebe bournei BBR-BPC family exhibits evolutionary conservatism and that members may have potential functional specializations.The study provides a reference for elucidating the biological functions of this family and for molecular breeding of valuable tree species.

     

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